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Solution structure of the Rhodanese-like domain in human ubiquitin specific protease 8 (UBP8)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1mM protein, 20mM d-Tris-HCl, pH 7.0, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 298 2 3D_15N-separated_NOESY 1mM protein, 20mM d-Tris-HCl, pH 7.0, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6 Bruker 2 processing NMRPipe 20020425 Delaglio, F. 3 data analysis NMRView 5 Johnson B.A. 4 structure solution CNS 1.1 Brunger, A.T. 5 refinement CNS 1.1 Brunger, A.T.