☰ Navigation Tabs
Yeast BBC1 SH3 domain, triclinic crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other atomic-resolution structure of yeast bbc1 SH3 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 3.2M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.73 α = 89.83 b = 44.77 β = 83.37 c = 51.12 γ = 85.41
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 90.8 0.144 3.9 1.7 11615 11615 -3 -3 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.4 92.5 0.291 2.3 1.7 2707
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT atomic-resolution structure of yeast bbc1 SH3 domain 2.5 10 -3 7751 7751 388 90.26 0.26594 0.26594 0.26286 0.2656 0.32595 0.328 RANDOM 10.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.26 -0.31 -0.2 -2.06 -0.66 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.169 r_scangle_it 0.973 r_angle_refined_deg 0.947 r_mcangle_it 0.942 r_angle_other_deg 0.705 r_scbond_it 0.654 r_mcbond_it 0.566 r_symmetry_vdw_refined 0.233 r_symmetry_vdw_other 0.198 r_nbd_other 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.169 r_scangle_it 0.973 r_angle_refined_deg 0.947 r_mcangle_it 0.942 r_angle_other_deg 0.705 r_scbond_it 0.654 r_mcbond_it 0.566 r_symmetry_vdw_refined 0.233 r_symmetry_vdw_other 0.198 r_nbd_other 0.195 r_nbd_refined 0.158 r_xyhbond_nbd_refined 0.14 r_nbtor_other 0.081 r_chiral_restr 0.059 r_symmetry_hbond_refined 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2068 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing