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Calcium bound form of human peptidylarginine deiminase type4 (PAD4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 PEGMME2000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.83 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.389 α = 90 b = 60.094 β = 124.37 c = 115.339 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2004-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 22.8 96.2 0.05 25.1 24864 24864 72.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 96.9 0.361 8.7 2485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 22.8 22280 22280 2495 96.1 0.22828 0.22828 0.2237 0.2287 0.26885 0.231 RANDOM 56.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.14 -4.22 6.13 -4.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.28 r_scangle_it 2.914 r_scbond_it 1.748 r_angle_refined_deg 1.662 r_mcangle_it 1.37 r_angle_other_deg 1.05 r_mcbond_it 0.737 r_nbd_other 0.236 r_nbd_refined 0.214 r_symmetry_vdw_other 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.28 r_scangle_it 2.914 r_scbond_it 1.748 r_angle_refined_deg 1.662 r_mcangle_it 1.37 r_angle_other_deg 1.05 r_mcbond_it 0.737 r_nbd_other 0.236 r_nbd_refined 0.214 r_symmetry_vdw_other 0.201 r_xyhbond_nbd_refined 0.188 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.107 r_nbtor_other 0.094 r_metal_ion_refined 0.093 r_symmetry_vdw_refined 0.058 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4745 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing