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Calcium free form of human peptidylarginine deiminase type4 (PAD4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 PEGMME2000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.612 α = 90 b = 60.437 β = 123.61 c = 113.488 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2002-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 95.35 97.6 0.046 12.7 20164 89.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 98.3 0.261 3.1 1.68 3980
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.8 33.44 17603 17603 1961 95.93 0.23428 0.23428 0.23084 0.234 0.26444 0.2593 RANDOM 64.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.16 -3.54 5.89 -4.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.026 r_scangle_it 3.235 r_angle_refined_deg 1.894 r_scbond_it 1.887 r_mcangle_it 1.712 r_angle_other_deg 0.971 r_mcbond_it 0.915 r_nbd_other 0.241 r_nbd_refined 0.234 r_symmetry_vdw_other 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.026 r_scangle_it 3.235 r_angle_refined_deg 1.894 r_scbond_it 1.887 r_mcangle_it 1.712 r_angle_other_deg 0.971 r_mcbond_it 0.915 r_nbd_other 0.241 r_nbd_refined 0.234 r_symmetry_vdw_other 0.218 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.099 r_nbtor_other 0.097 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4382 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling SHARP phasing