X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1EUUPDB ENTRY 1EUU

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1516 % PEG 3350, 0.2 M AMMONIUM CITRATE, pH 5.00
Crystal Properties
Matthews coefficientSolvent content
2.346.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 143.258α = 90
b = 143.258β = 90
c = 160.25γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDTOROIDAL MIRROR2004-09-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.157.831000.077.47.21109116
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.211000.471.57

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1EUU2.1124.0310525955441000.1780.1750.238RANDOM29.34
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.81-0.4-0.811.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.507
r_dihedral_angle_4_deg19.651
r_dihedral_angle_3_deg14.261
r_dihedral_angle_1_deg7.114
r_scangle_it3.806
r_scbond_it2.593
r_angle_refined_deg1.835
r_mcangle_it1.448
r_mcbond_it0.903
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.507
r_dihedral_angle_4_deg19.651
r_dihedral_angle_3_deg14.261
r_dihedral_angle_1_deg7.114
r_scangle_it3.806
r_scbond_it2.593
r_angle_refined_deg1.835
r_mcangle_it1.448
r_mcbond_it0.903
r_nbtor_refined0.308
r_symmetry_hbond_refined0.223
r_nbd_refined0.206
r_symmetry_vdw_refined0.187
r_xyhbond_nbd_refined0.145
r_chiral_restr0.124
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13589
Nucleic Acid Atoms
Solvent Atoms1078
Heterogen Atoms105

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing