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Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.03 59.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.504 α = 90 b = 86.86 β = 90 c = 125.205 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 70.71 93.7 0.04 7.1 2.5 34365 2 28.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2 70.71 30241 1610 92.7 0.18 0.177 0.233 RANDOM 26.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -1.28 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 17.279 r_dihedral_angle_3_deg 15.262 r_dihedral_angle_1_deg 5.154 r_scangle_it 4.142 r_mcangle_it 3.564 r_scbond_it 3.167 r_mcbond_it 3.166 r_angle_refined_deg 1.253 r_angle_other_deg 0.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 17.279 r_dihedral_angle_3_deg 15.262 r_dihedral_angle_1_deg 5.154 r_scangle_it 4.142 r_mcangle_it 3.564 r_scbond_it 3.167 r_mcbond_it 3.166 r_angle_refined_deg 1.253 r_angle_other_deg 0.795 r_nbd_refined 0.205 r_symmetry_vdw_other 0.199 r_nbtor_refined 0.175 r_nbd_other 0.171 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.144 r_symmetry_vdw_refined 0.11 r_nbtor_other 0.082 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2834 Nucleic Acid Atoms Solvent Atoms 569 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling DENCOR phasing