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WINGED BEAN LECTIN, SACCHARIDE FREE FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WBL PDB ENTRY 1WBL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 CRYSTALS WERE GROWN BY BATCH METHOD IN WHICH 25
MICROLITERS OF AN 80 MG/ML PROTEIN SOLUTION IN 0.02M PHOSPHATE BUFFER AT PH
7.0, CONTAINING 0.15M SODIUM CHLORIDE, 0.025 (W/V) SODIUM AZIDE, WAS MIXED
WITH 45% MPD IN THE SAME BUFFER AT 20 DEGREES CENTIGRADE.
Crystal Properties Matthews coefficient Solvent content 3.26 61.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.159 α = 90 b = 75.161 β = 106.91 c = 95.772 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH MIRRORS 1995-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.6 88.7 0.073 12.5 1.5 26671 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 80.6 0.359 2.8 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WBL 2.3 8 23516 1870 80.3 0.197 0.1984 0.257 RANDOM 31.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 27.6 x_scangle_it 6.48 x_scbond_it 4.97 x_mcangle_it 4.49 x_mcbond_it 2.99 x_angle_deg 1.7 x_improper_angle_d 1.45 x_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3622 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 60
Software Software Software Name Purpose AMoRE phasing X-PLOR refinement XDS data reduction XDS data scaling