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Structure of UDP-galactopyranose mutase from Klebsiella Pneumoniae with FADH-
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1USJ PDB ENTRY 1USJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1M BIS-TRIS PH6.5, 50MM CACL2, 30% PEG550, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.37 47.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.997 α = 90 b = 85.997 β = 90 c = 100.809 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2004-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 28.15 99.6 0.06 9.5 2.5 18331
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 99.1 0.48 1.6 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1USJ 2.35 27.12 17405 914 99.5 0.204 0.2 0.1989 0.268 0.2688 RANDOM 44.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.22 -0.43 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.577 r_dihedral_angle_3_deg 20.002 r_dihedral_angle_4_deg 18.21 r_dihedral_angle_1_deg 7.406 r_scangle_it 2.706 r_scbond_it 1.82 r_angle_refined_deg 1.63 r_mcangle_it 1.133 r_mcbond_it 0.657 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.577 r_dihedral_angle_3_deg 20.002 r_dihedral_angle_4_deg 18.21 r_dihedral_angle_1_deg 7.406 r_scangle_it 2.706 r_scbond_it 1.82 r_angle_refined_deg 1.63 r_mcangle_it 1.133 r_mcbond_it 0.657 r_nbtor_refined 0.313 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.208 r_symmetry_vdw_refined 0.154 r_chiral_restr 0.117 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3077 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling AMoRE phasing