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Crystal structure of Rv1155 from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 15 % (W/V) PEG 6000 0.1 M HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.1 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.953 α = 90 b = 55.122 β = 108.31 c = 55.231 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-02-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38 97.4 0.04 20 3.3 24197 16.48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 95 0.21 4.7 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 20 22732 1429 97.1 0.143 0.141 0.155 0.175 0.1871 RANDOM 18.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 0.1 -0.52 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.018 r_dihedral_angle_4_deg 19.93 r_dihedral_angle_3_deg 13.827 r_dihedral_angle_1_deg 5.582 r_scangle_it 3.219 r_scbond_it 2.232 r_mcangle_it 1.397 r_angle_refined_deg 1.28 r_mcbond_it 1.06 r_angle_other_deg 0.804
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.018 r_dihedral_angle_4_deg 19.93 r_dihedral_angle_3_deg 13.827 r_dihedral_angle_1_deg 5.582 r_scangle_it 3.219 r_scbond_it 2.232 r_mcangle_it 1.397 r_angle_refined_deg 1.28 r_mcbond_it 1.06 r_angle_other_deg 0.804 r_symmetry_vdw_other 0.271 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.194 r_nbd_other 0.19 r_nbtor_refined 0.171 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.153 r_nbtor_other 0.082 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2225 Nucleic Acid Atoms Solvent Atoms 371 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling SOLVE phasing