☰ Navigation Tabs
Mosquito-larvicidal toxin Cry4Ba from Bacillus thuringiensis ssp. Israelensis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLC PDB ENTRY 1DLC, PDB ENTRY 1CIY experimental model PDB 1CIY PDB ENTRY 1DLC, PDB ENTRY 1CIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 VAPOUR DIFFUSION AT 20C IN HANGING DROPS CONTAINING 1:1 MIXTURE OF PROTEIN AT 8 MG/ML IN 50 MM SODIUM CARBONATE PH 10.5, 0.1 M SODIUM BROMIDE, 1 MM DTT AND PROTEASE INHIBITORS, AND THE RESERVOIR BUFFER CONSISTING OF 100MM TRIS ACETATE PH7-8 AND 0.4-0.6 M SODIUM BROMIDE.
Crystal Properties Matthews coefficient Solvent content 4.8 74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.8 α = 90 b = 185.8 β = 90 c = 187.9 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 73.97 99.6 0.066 24.1 9.7 1207111 24.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 100 0.353 15.1 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT PDB ENTRY 1DLC, PDB ENTRY 1CIY 1.75 73.97 124587 6217 100 0.205 0.205 0.2161 0.218 0.2201 RANDOM 27.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.932 -1.764 -1.932 3.865
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_scangle_it 2.77 c_scbond_it 2 c_mcangle_it 1.83 c_mcbond_it 1.22 c_angle_deg 1.2 c_improper_angle_d 0.71 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_scangle_it 2.77 c_scbond_it 2 c_mcangle_it 1.83 c_mcbond_it 1.22 c_angle_deg 1.2 c_improper_angle_d 0.71 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4460 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 33
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling MLPHARE phasing