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Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 THE PROTEIN AT APPROX. 10 MG/ML WAS CRYSTALLIZED IN 20% PEG3350 AND 0.1 M HEPES 7.5, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.673 α = 90 b = 77.533 β = 100.01 c = 60.965 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-06-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97935, 0.9795, 0.976565 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.46 100 0.11 9.23 3.9 20938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.02 100 0.57 1.47 3.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 60.08 19845 1074 100 0.2 0.198 0.2007 0.24 0.2395 RANDOM 31.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.27 -0.24 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.663 r_dihedral_angle_4_deg 20.185 r_dihedral_angle_3_deg 19.023 r_dihedral_angle_1_deg 6.657 r_scangle_it 3.767 r_scbond_it 2.48 r_angle_refined_deg 1.401 r_mcangle_it 1.352 r_mcbond_it 1.174 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.663 r_dihedral_angle_4_deg 20.185 r_dihedral_angle_3_deg 19.023 r_dihedral_angle_1_deg 6.657 r_scangle_it 3.767 r_scbond_it 2.48 r_angle_refined_deg 1.401 r_mcangle_it 1.352 r_mcbond_it 1.174 r_nbtor_refined 0.307 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.215 r_symmetry_vdw_refined 0.188 r_chiral_restr 0.118 r_symmetry_hbond_refined 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2423 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing