☰ Navigation Tabs
CBM29-2 mutant D114A: Probing the Mechanism of Ligand Recognition by Family 29 Carbohydrate Binding Modules
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GWM PDB ENTRY 1GWM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100 MM NA/HEPES BUFFER PH 7.5, 150 MM KSCN, 20% ETHYLENE GLYCOL, 18% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.19 α = 90 b = 93.19 β = 90 c = 82.354 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 38 100 0.07 22.8 11.9 48338
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.71 100 0.71 2 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GWM 2.5 37.8 12394 660 100 0.183 0.18 0.1828 0.235 RANDOM 21.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.349 r_dihedral_angle_4_deg 22.514 r_dihedral_angle_3_deg 15.947 r_dihedral_angle_1_deg 6.96 r_scangle_it 3.119 r_scbond_it 2.032 r_angle_refined_deg 1.582 r_mcangle_it 1.097 r_mcbond_it 0.596 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.349 r_dihedral_angle_4_deg 22.514 r_dihedral_angle_3_deg 15.947 r_dihedral_angle_1_deg 6.96 r_scangle_it 3.119 r_scbond_it 2.032 r_angle_refined_deg 1.582 r_mcangle_it 1.097 r_mcbond_it 0.596 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.288 r_symmetry_hbond_refined 0.216 r_nbd_refined 0.209 r_metal_ion_refined 0.173 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.111 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2310 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing