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The Structure of gene product af1683 from Archaeoglobus fulgidus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 SODIUM CITRATE, PEG 3350, GLYCEROL, pH 5.50
Crystal Properties Matthews coefficient Solvent content 3.3 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.73 α = 90 b = 66.73 β = 90 c = 181.381 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM- SBC2 DUAL SLITS 2004-04-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97967, 0.97954 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95.8 0.07 9.8 7.6 26396
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 0.6 3.5 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 57.83 13960 742 99.8 0.212 0.211 0.2035 0.225 0.2015 RANDOM 30.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.86 r_dihedral_angle_3_deg 13.673 r_dihedral_angle_4_deg 11.894 r_dihedral_angle_1_deg 5.499 r_scangle_it 3.463 r_scbond_it 2.328 r_mcangle_it 1.379 r_angle_refined_deg 1.136 r_mcbond_it 0.796 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.86 r_dihedral_angle_3_deg 13.673 r_dihedral_angle_4_deg 11.894 r_dihedral_angle_1_deg 5.499 r_scangle_it 3.463 r_scbond_it 2.328 r_mcangle_it 1.379 r_angle_refined_deg 1.136 r_mcbond_it 0.796 r_nbtor_refined 0.309 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.143 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1257 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms
Software Software Software Name Purpose DM model building HKL-2000 data reduction HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing ARP/wARP phasing REFMAC refinement