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p38 Kinase crystal structure in complex with small molecule inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.97 58.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.684 α = 90 b = 85.369 β = 90 c = 126 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 92.6 0.09 5.6 2.2 25791 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.2 70.71 22487 1229 92 0.174 0.171 0.235 RANDOM 21.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.22 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.37 r_dihedral_angle_4_deg 22.541 r_dihedral_angle_3_deg 15.49 r_dihedral_angle_1_deg 6.114 r_scangle_it 2.758 r_mcangle_it 2.076 r_mcbond_it 1.963 r_scbond_it 1.769 r_angle_refined_deg 1.479 r_angle_other_deg 1.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.37 r_dihedral_angle_4_deg 22.541 r_dihedral_angle_3_deg 15.49 r_dihedral_angle_1_deg 6.114 r_scangle_it 2.758 r_mcangle_it 2.076 r_mcbond_it 1.963 r_scbond_it 1.769 r_angle_refined_deg 1.479 r_angle_other_deg 1.161 r_mcbond_other 0.305 r_nbd_refined 0.173 r_nbtor_refined 0.162 r_symmetry_hbond_refined 0.148 r_nbd_other 0.121 r_xyhbond_nbd_refined 0.106 r_symmetry_vdw_other 0.101 r_chiral_restr 0.081 r_nbtor_other 0.081 r_symmetry_vdw_refined 0.047 r_xyhbond_nbd_other 0.018 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2834 Nucleic Acid Atoms Solvent Atoms 528 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement