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Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein after structural annealing at 170K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HCJ PDB ENTRY 1HCJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 277 CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.273 α = 90 b = 52.705 β = 119.91 c = 141.746 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RH COATED SILICON MIRROR 2003-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 33.15 97.3 0.08 5.7 3.9 85637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 84 0.262 2.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HCJ 1.85 119.52 79055 4166 97.2 0.182 0.179 0.1862 0.226 0.2294 RANDOM 18.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.04 0.56 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.472 r_scangle_it 4.437 r_scbond_it 2.664 r_mcangle_it 1.626 r_angle_refined_deg 1.521 r_angle_other_deg 1.231 r_mcbond_it 0.818 r_symmetry_hbond_refined 0.375 r_nbd_other 0.263 r_nbd_refined 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.472 r_scangle_it 4.437 r_scbond_it 2.664 r_mcangle_it 1.626 r_angle_refined_deg 1.521 r_angle_other_deg 1.231 r_mcbond_it 0.818 r_symmetry_hbond_refined 0.375 r_nbd_other 0.263 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.162 r_symmetry_vdw_other 0.144 r_chiral_restr 0.132 r_symmetry_vdw_refined 0.102 r_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7302 Nucleic Acid Atoms Solvent Atoms 917 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing