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Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HCJ PDB ENTRY 1HCJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 277 CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.308 α = 90 b = 52.815 β = 120.07 c = 141.944 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RH COATED SILICON MIRROR 2003-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 36.76 97.6 0.084 5.5 3.7 85530
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 86.6 0.248 2.9 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HCJ 1.85 119.52 79139 4162 97.4 0.182 0.18 0.22 0.2135 RANDOM 16.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.26 0.62 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.569 r_scangle_it 4.351 r_scbond_it 2.605 r_mcangle_it 1.535 r_angle_refined_deg 1.509 r_angle_other_deg 1.223 r_mcbond_it 0.774 r_nbd_other 0.262 r_nbd_refined 0.251 r_symmetry_vdw_other 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.569 r_scangle_it 4.351 r_scbond_it 2.605 r_mcangle_it 1.535 r_angle_refined_deg 1.509 r_angle_other_deg 1.223 r_mcbond_it 0.774 r_nbd_other 0.262 r_nbd_refined 0.251 r_symmetry_vdw_other 0.248 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.126 r_symmetry_vdw_refined 0.125 r_symmetry_hbond_refined 0.113 r_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7302 Nucleic Acid Atoms Solvent Atoms 909 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing