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Wild-Type Aequorea victoria Green Fluorescent Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HCJ PDB ENTRY 1HCJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 277 CRYSTALS WERE GROWN AT 4C FROM 50 MM MGCL2, 14-17 % PEG3350 AND 50-100 MM TRIS/CL PH 7.8 - 8.6.
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.968 α = 90 b = 52.73 β = 120.01 c = 141.628 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RH COATED SILICON MIRROR 2003-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 37.53 97.5 0.066 6.7 3 85082
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 86 0.172 4.2 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HCJ 1.85 119.52 78599 4135 97.2 0.178 0.176 0.1837 0.216 0.2207 RANDOM 15.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.26 0.61 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.661 r_scangle_it 4.128 r_scbond_it 2.499 r_angle_refined_deg 1.482 r_mcangle_it 1.44 r_angle_other_deg 1.224 r_mcbond_it 0.729 r_nbd_other 0.263 r_nbd_refined 0.256 r_symmetry_vdw_other 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.661 r_scangle_it 4.128 r_scbond_it 2.499 r_angle_refined_deg 1.482 r_mcangle_it 1.44 r_angle_other_deg 1.224 r_mcbond_it 0.729 r_nbd_other 0.263 r_nbd_refined 0.256 r_symmetry_vdw_other 0.21 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.123 r_symmetry_vdw_refined 0.102 r_nbtor_other 0.085 r_symmetry_hbond_refined 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7314 Nucleic Acid Atoms Solvent Atoms 908 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing