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Binary structure of human DECR solved by SeMet SAD.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.948 α = 90 b = 131.737 β = 92.49 c = 71.295 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2003-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 70 99.7 0.06 8 3.8 67331 2 32.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 98.8 0.21 3.2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 70.71 61874 3302 96.5 0.183 0.18 0.1805 0.221 0.2195 RANDOM 29.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.101 0.88 -0.952 -2.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.732 r_scangle_it 3.59 r_scbond_it 2.247 r_angle_refined_deg 1.284 r_mcangle_it 1.24 r_mcbond_it 0.635 r_symmetry_hbond_refined 0.32 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.732 r_scangle_it 3.59 r_scbond_it 2.247 r_angle_refined_deg 1.284 r_mcangle_it 1.24 r_mcbond_it 0.635 r_symmetry_hbond_refined 0.32 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.19 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8488 Nucleic Acid Atoms Solvent Atoms 527 Heterogen Atoms 204
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing