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Structure of human DECR ternary complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.281 α = 90 b = 131.658 β = 92.64 c = 70.849 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2004-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 95.5 0.05 23.1 3.6 110749 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 90.8 0.59 2.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.75 70.71 105117 5590 95.3 0.229 0.227 0.2246 0.268 0.2654 RANDOM 35.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.78 1.14 -0.63 -3.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.29 r_scangle_it 1.64 r_angle_refined_deg 1.155 r_scbond_it 0.992 r_mcangle_it 0.851 r_mcbond_it 0.467 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.29 r_scangle_it 1.64 r_angle_refined_deg 1.155 r_scbond_it 0.992 r_mcangle_it 0.851 r_mcbond_it 0.467 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.075 r_gen_planes_refined 0.013 r_bond_refined_d 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8527 Nucleic Acid Atoms Solvent Atoms 580 Heterogen Atoms 412
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling