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GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AV2 PDB ENTRY 1AV2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH CRYSTALLIZATION WITH 30 MG/ML GRAMICIDIN AND SATURATED RBCL IN ETHANOL
Crystal Properties Matthews coefficient Solvent content 1.61 23.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.06 α = 90 b = 31.3 β = 90 c = 51.691 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 20 98.7 0.07 20.5 8.25 33140
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 20 97.2 0.34 6.4 4.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1AV2 1.14 20 33140 1628 98.7 0.1731 0.1714 0.1757 0.2147 0.2145 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 24 557.77 570.12
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.138 s_zero_chiral_vol 0.098 s_similar_adp_cmpnt 0.038 s_angle_d 0.036 s_from_restr_planes 0.028 s_bond_d 0.015 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist s_anti_bump_dis_restr s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 567 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 23
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling