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Human Inositol (1,4,5)-trisphosphate 3-kinase substituted with selenomethionine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.9 M NA CITRATE, 0.1 M NACL, 0.1 M TRIS PH 8.
Crystal Properties Matthews coefficient Solvent content 2.6 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.304 α = 90 b = 95.798 β = 90 c = 180.352 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2003-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 57.74 94.7 0.083 4.892 6.15 53000 2 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 84.2 0.31 2.35 5.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.8 45.17 48647 2576 91.5 0.204 0.203 0.347 0.241 0.3788 RANDOM 23.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.47 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.589 r_angle_refined_deg 1.655 r_angle_other_deg 0.833 r_nbd_other 0.264 r_symmetry_vdw_other 0.256 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.221 r_symmetry_vdw_refined 0.2 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.589 r_angle_refined_deg 1.655 r_angle_other_deg 0.833 r_nbd_other 0.264 r_symmetry_vdw_other 0.256 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.221 r_symmetry_vdw_refined 0.2 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.101 r_nbtor_other 0.097 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4405 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling