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Plant Cytokinin Dehydrogenase in Complex with trans-Zeatin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 pH 4.60
Crystal Properties Matthews coefficient Solvent content 3.46 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.033 α = 90 b = 171.033 β = 90 c = 54.143 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2004-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98.9 0.11 11.2 4.4 63311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97.9 0.46 2.7 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.9 15 59758 3152 98.9 0.206 0.205 0.2062 0.224 0.223 RANDOM 15.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.44 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.474 r_scangle_it 1.793 r_angle_refined_deg 1.152 r_scbond_it 1.043 r_mcangle_it 0.691 r_mcbond_it 0.356 r_nbd_refined 0.179 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.474 r_scangle_it 1.793 r_angle_refined_deg 1.152 r_scbond_it 1.043 r_mcangle_it 0.691 r_mcbond_it 0.356 r_nbd_refined 0.179 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.081 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3672 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 139
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CCP4 phasing