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Arabidopsis thaliana acyl-CoA oxidase 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IS2 PDB ENTRY 1IS2 DOMAIN 2 AND 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2 M CALCIUM ACETATE, 0.1 M SODIUM COCADYLATE PH 6.5, 14% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.1 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.201 α = 90 b = 117.001 β = 90 c = 131.047 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH 2003-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40.5 95.8 0.11 7.4 2.3 88554 15.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 95.2 0.49 2 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IS2 DOMAIN 2 AND 3 2 29.59 86263 4343 96.9 0.204 0.204 0.2052 0.249 0.249 RANDOM 26.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.66 0.29 -3.95
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.8 c_scangle_it 3.44 c_scbond_it 2.65 c_mcangle_it 2.39 c_mcbond_it 1.76 c_angle_deg 1.1 c_improper_angle_d 0.81 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.8 c_scangle_it 3.44 c_scbond_it 2.65 c_mcangle_it 2.39 c_mcbond_it 1.76 c_angle_deg 1.1 c_improper_angle_d 0.81 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10256 Nucleic Acid Atoms Solvent Atoms 748 Heterogen Atoms 115
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling