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Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe NO Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK0 PDB ENTRY 1BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL (PH8.5), pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.26 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.13 α = 90 b = 71.45 β = 90 c = 101.88 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1997-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 22 92.3 0.115 2.8 38692
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 85 0.409 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BK0 1.65 58.72 37099 1593 91.7 0.171 0.17 0.1824 0.204 0.2211 RANDOM 10.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.7 -0.79
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.147 r_scbond_it 2.687 r_angle_other_deg 1.741 r_mcangle_it 1.649 r_mcbond_it 0.999 r_dihedral_angle_3_deg 0.869 r_xyhbond_nbd_other 0.367 r_symmetry_vdw_refined 0.284 r_nbd_refined 0.229 r_symmetry_vdw_other 0.219
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.147 r_scbond_it 2.687 r_angle_other_deg 1.741 r_mcangle_it 1.649 r_mcbond_it 0.999 r_dihedral_angle_3_deg 0.869 r_xyhbond_nbd_other 0.367 r_symmetry_vdw_refined 0.284 r_nbd_refined 0.229 r_symmetry_vdw_other 0.219 r_xyhbond_nbd_refined 0.217 r_symmetry_hbond_refined 0.199 r_nbd_other 0.195 r_chiral_restr 0.116 r_nbtor_other 0.078 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2641 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement DENZO data reduction Agrovata data scaling SCALA data scaling