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Succinate Complex of AtsK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OIH PDB ENTRY 1OIH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 25 MM AMMONIUM SULFATE 175 MM SODUIM SUCCINATE PH 5.6, 15 % PEG 4000 30 % GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3.16 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.514 α = 90 b = 145.815 β = 90 c = 158.788 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 100 0.127 10.7 6 92306
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.25 100 0.522 3.6 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OIH 2.15 48.8 87475 4734 100 0.196 0.194 0.225 RANDOM 26.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 0.86 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.301 r_dihedral_angle_4_deg 17.41 r_dihedral_angle_3_deg 14.361 r_dihedral_angle_1_deg 6.877 r_scangle_it 5.954 r_scbond_it 4.375 r_mcangle_it 3.148 r_mcbond_it 2.096 r_angle_refined_deg 1.963 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.301 r_dihedral_angle_4_deg 17.41 r_dihedral_angle_3_deg 14.361 r_dihedral_angle_1_deg 6.877 r_scangle_it 5.954 r_scbond_it 4.375 r_mcangle_it 3.148 r_mcbond_it 2.096 r_angle_refined_deg 1.963 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.214 r_chiral_restr 0.157 r_symmetry_hbond_refined 0.109 r_bond_refined_d 0.027 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7591 Nucleic Acid Atoms Solvent Atoms 524 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling