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Fe-Succinate Complex of AtsK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OIH PDB ENTRY 1OIH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 25 MM AMMONIUM SULFATE 175 MM SODUIM SUCCINATE PH 5.6, 15 % PEG 4000 30 % GLYCEROL SOAKING IN 2 MM FE(NH4)2(SO4)2X6H2O
Crystal Properties Matthews coefficient Solvent content 3.05 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.845 α = 90 b = 141 β = 90 c = 160.149 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 95.9 0.081 24 3.8 27572
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 76.4 0.128 9.53 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OIH 2.5 50 25828 1461 99.2 0.23 0.227 0.2319 0.287 RANDOM 50.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.09 -4.26 10.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.255 r_dihedral_angle_3_deg 18.802 r_dihedral_angle_4_deg 17.311 r_dihedral_angle_1_deg 8.383 r_scangle_it 6.087 r_scbond_it 4.587 r_mcangle_it 3.474 r_angle_refined_deg 2.418 r_mcbond_it 2.117 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.255 r_dihedral_angle_3_deg 18.802 r_dihedral_angle_4_deg 17.311 r_dihedral_angle_1_deg 8.383 r_scangle_it 6.087 r_scbond_it 4.587 r_mcangle_it 3.474 r_angle_refined_deg 2.418 r_mcbond_it 2.117 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.238 r_xyhbond_nbd_refined 0.172 r_chiral_restr 0.161 r_bond_refined_d 0.029 r_metal_ion_refined 0.013 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3871 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling