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Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 293 24% NP_PEG 4000, 0.065M Tris_base, 0.16M Mg Cl, 0.035M Tris Cl, 20% Glycerol, CuCl2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 293 24% NP_PEG 4000, 0.065M Tris_base, 0.16M Mg Cl, 0.035M Tris Cl, 20% Glycerol, CuCl2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.49 2.8 55.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.3 α = 90 b = 104.66 β = 90 c = 286.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-09-22 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC 2003-09-11 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979686, 0.979835, 1.020026 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.5 28.66 98.6 0.067 13.7 4.6 49807 82.46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.5 2.64 93.3 0.727 2.3 3 6756
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 28.66 42483 2243 99.3 0.22399 0.22144 0.2238 0.27227 0.2723 RANDOM 62.826
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6 -1.49 -4.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.594 r_dihedral_angle_4_deg 20.523 r_dihedral_angle_3_deg 19.325 r_dihedral_angle_1_deg 7.582 r_scangle_it 5.77 r_scbond_it 4.206 r_mcangle_it 2.341 r_angle_refined_deg 1.595 r_mcbond_it 1.535 r_angle_other_deg 0.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.594 r_dihedral_angle_4_deg 20.523 r_dihedral_angle_3_deg 19.325 r_dihedral_angle_1_deg 7.582 r_scangle_it 5.77 r_scbond_it 4.206 r_mcangle_it 2.341 r_angle_refined_deg 1.595 r_mcbond_it 1.535 r_angle_other_deg 0.873 r_mcbond_other 0.492 r_nbd_refined 0.248 r_symmetry_vdw_other 0.202 r_nbtor_refined 0.199 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.129 r_nbtor_other 0.092 r_chiral_restr 0.085 r_xyhbond_nbd_other 0.019 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9010 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 4
Software Software Software Name Purpose XDS data scaling SCALA data scaling SHELXD phasing REFMAC refinement XDS data reduction CCP4 data scaling autoSHARP phasing