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Crystal structure of Arginine biosynthesis bifunctional protein argJ (10175521) from Bacillus halodurans at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.2 277 40.0% Ethylene-Glycol, 0.2M (NH4)2SO4, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.2 277 40.0% Ethylene-Glycol, 0.2M (NH4)2SO4, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.05 59.62 2.83 56.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.658 α = 90 b = 70.658 β = 90 c = 222.292 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2005-01-21 M MAD 2 1 100
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97963, 0.99187, 0.97941 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.81 98.8 0.065 21 5.3 38627 27.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 90.7 0.109 10.2 3 2387
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.81 36636 1935 98.65 0.14056 0.13967 0.1536 0.15782 0.1703 RANDOM 25.334
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.21 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.788 r_dihedral_angle_3_deg 11.657 r_dihedral_angle_4_deg 9.939 r_dihedral_angle_1_deg 5.969 r_scangle_it 3.581 r_scbond_it 2.485 r_angle_refined_deg 1.426 r_mcangle_it 1.146 r_mcbond_it 1.117 r_angle_other_deg 0.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.788 r_dihedral_angle_3_deg 11.657 r_dihedral_angle_4_deg 9.939 r_dihedral_angle_1_deg 5.969 r_scangle_it 3.581 r_scbond_it 2.485 r_angle_refined_deg 1.426 r_mcangle_it 1.146 r_mcbond_it 1.117 r_angle_other_deg 0.833 r_symmetry_vdw_refined 0.298 r_symmetry_vdw_other 0.22 r_mcbond_other 0.219 r_symmetry_hbond_refined 0.213 r_nbd_refined 0.2 r_nbtor_refined 0.172 r_nbd_other 0.171 r_xyhbond_nbd_refined 0.147 r_xyhbond_nbd_other 0.102 r_chiral_restr 0.092 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2968 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 84
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement Xpleo refinement CCP4 data scaling