☰ Navigation Tabs
Crystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7 277 1.0M LiCl, 10.0% PEG-6000, 0.1M HEPES pH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.79 55.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.03 α = 90 b = 96.64 β = 90 c = 115.78 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2005-01-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97933, 1.00003,0.97951 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 28.61 99.9 0.087 10.3 3.8 163581 32.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.82 100 0.627 2.8 3.8 23624
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.73 28.61 155289 8214 99.85 0.15314 0.15164 0.1631 0.18161 0.1899 RANDOM 24.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 0.6 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.68 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 11.412 r_scangle_it 7.121 r_dihedral_angle_1_deg 6.082 r_scbond_it 5.03 r_mcangle_it 3.083 r_mcbond_it 1.963 r_angle_refined_deg 1.554 r_angle_other_deg 0.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.68 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 11.412 r_scangle_it 7.121 r_dihedral_angle_1_deg 6.082 r_scbond_it 5.03 r_mcangle_it 3.083 r_mcbond_it 1.963 r_angle_refined_deg 1.554 r_angle_other_deg 0.879 r_mcbond_other 0.601 r_metal_ion_refined 0.324 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.22 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_other 0.185 r_nbd_other 0.181 r_symmetry_vdw_refined 0.134 r_chiral_restr 0.102 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8692 Nucleic Acid Atoms Solvent Atoms 1098 Heterogen Atoms 161
Software Software Software Name Purpose XDS data scaling SCALA data scaling SHELXD phasing SHARP phasing REFMAC refinement XDS data reduction CCP4 data scaling