1VR0

Crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from Clostridium acetobutylicum at 2.6 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP7.527720.0% PEG-8000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3346.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.686α = 90
b = 69.193β = 90
c = 453.518γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2004-09-19MMAD
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.020035,0.979834ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.495085.390.04824.384.52283850.62
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.492.5329.220.1533.191.34377

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.4938.721601115985.470.192010.189940.22938RANDOM38.679
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.6-0.27-3.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.539
r_dihedral_angle_4_deg19.575
r_dihedral_angle_3_deg16.541
r_dihedral_angle_1_deg5.772
r_scangle_it2.733
r_scbond_it1.741
r_angle_refined_deg1.509
r_mcangle_it0.874
r_angle_other_deg0.829
r_mcbond_it0.821
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.539
r_dihedral_angle_4_deg19.575
r_dihedral_angle_3_deg16.541
r_dihedral_angle_1_deg5.772
r_scangle_it2.733
r_scbond_it1.741
r_angle_refined_deg1.509
r_mcangle_it0.874
r_angle_other_deg0.829
r_mcbond_it0.821
r_symmetry_hbond_refined0.26
r_symmetry_vdw_other0.231
r_nbd_refined0.211
r_nbtor_refined0.18
r_nbd_other0.172
r_mcbond_other0.166
r_xyhbond_nbd_refined0.148
r_symmetry_vdw_refined0.134
r_nbtor_other0.087
r_chiral_restr0.082
r_bond_refined_d0.017
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5478
Nucleic Acid Atoms
Solvent Atoms93
Heterogen Atoms32

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
autoSHARPphasing
REFMACrefinement