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CRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 15% PEG MME 5000, 0.06M Tris Cl, 0.04M Tris_base, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.4 48.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.035 α = 90 b = 110.924 β = 90 c = 129.927 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-10-09 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979625,0.979741,1.019951 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.28 98 0.153 13.3 6.1 38294 34.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 97.5 0.325 3.2 3.6 2768
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 29.08 36309 1913 97.55 0.18932 0.18633 0.1973 0.24436 0.2533 RANDOM 19.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 1.52 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.607 r_dihedral_angle_4_deg 21.265 r_dihedral_angle_3_deg 13.744 r_dihedral_angle_1_deg 6.442 r_scangle_it 4.421 r_scbond_it 3.284 r_mcangle_it 1.76 r_mcbond_it 1.553 r_angle_refined_deg 1.321 r_angle_other_deg 0.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.607 r_dihedral_angle_4_deg 21.265 r_dihedral_angle_3_deg 13.744 r_dihedral_angle_1_deg 6.442 r_scangle_it 4.421 r_scbond_it 3.284 r_mcangle_it 1.76 r_mcbond_it 1.553 r_angle_refined_deg 1.321 r_angle_other_deg 0.825 r_mcbond_other 0.406 r_symmetry_vdw_refined 0.259 r_symmetry_vdw_other 0.24 r_nbd_refined 0.195 r_nbd_other 0.182 r_nbtor_refined 0.172 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.149 r_nbtor_other 0.081 r_chiral_restr 0.073 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6798 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement CCP4 data scaling