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Crystal structure of a nipsnap family protein with unknown function (atu4242) from agrobacterium tumefaciens str. c58 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 14% PEG MME 2000, 0.175M Sulfate_NH4, 0.05M Tris_base, 0.05M Tris Cl, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 41.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.792 α = 90 b = 94.792 β = 90 c = 303.133 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-10-09 M MAD 2 1 x-ray M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979648,1.019943 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 29.97 100 0.09 13.2 6.3 110198 23.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.5 1.54 100 0.59 1.7 4.2 8036
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.97 104690 5508 99.96 0.1523 0.15099 0.166 0.17681 0.1893 RANDOM 19.154
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.24 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.133 r_dihedral_angle_4_deg 18.35 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_1_deg 6.93 r_scangle_it 4.484 r_scbond_it 3.509 r_mcbond_it 1.917 r_mcangle_it 1.843 r_angle_refined_deg 1.46 r_angle_other_deg 0.886
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.133 r_dihedral_angle_4_deg 18.35 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_1_deg 6.93 r_scangle_it 4.484 r_scbond_it 3.509 r_mcbond_it 1.917 r_mcangle_it 1.843 r_angle_refined_deg 1.46 r_angle_other_deg 0.886 r_mcbond_other 0.357 r_symmetry_vdw_other 0.297 r_nbd_refined 0.216 r_nbd_other 0.207 r_symmetry_hbond_other 0.203 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.157 r_chiral_restr 0.09 r_nbtor_other 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4563 Nucleic Acid Atoms Solvent Atoms 953 Heterogen Atoms 41
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement CCP4 data scaling