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Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JI0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4 277 0.8M (NH4)2SO4, 0.1M Citrate pH 4.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.98 58.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.59 α = 90 b = 90.59 β = 90 c = 72.238 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 39.23 99.2 0.119 13.6 8 20216 36.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 92.1 0.66 2 4.3 1371
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JI0 2.1 39.23 19181 1030 99.16 0.17372 0.17139 0.1824 0.21581 0.2185 RANDOM 31.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 0.89 1.79 -2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.338 r_dihedral_angle_4_deg 18.635 r_dihedral_angle_3_deg 17.406 r_scangle_it 9.49 r_scbond_it 6.963 r_dihedral_angle_1_deg 6.36 r_mcangle_it 3.445 r_mcbond_it 2.698 r_angle_refined_deg 1.667 r_angle_other_deg 0.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.338 r_dihedral_angle_4_deg 18.635 r_dihedral_angle_3_deg 17.406 r_scangle_it 9.49 r_scbond_it 6.963 r_dihedral_angle_1_deg 6.36 r_mcangle_it 3.445 r_mcbond_it 2.698 r_angle_refined_deg 1.667 r_angle_other_deg 0.875 r_mcbond_other 0.572 r_symmetry_vdw_other 0.305 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.212 r_nbd_other 0.183 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.1 r_nbtor_other 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1849 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 10
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling