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X-Ray Crystal Structure of Tartronate Semialdehyde Reductase [Salmonella Typhimurium LT2]
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.00
Crystal Properties Matthews coefficient Solvent content 3.6 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.275 α = 90 b = 105.428 β = 90 c = 155.045 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2004-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 40 87.2 0.104 34.6 12 48128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.69 44.2 0.324 2.75 3.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.65 40 48124 1979 87 0.121 0.12 0.1388 0.144 0.1402 RANDOM 16.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 0.55 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.286 r_scangle_it 4.029 r_sphericity_free 3.148 r_scbond_it 2.506 r_sphericity_bonded 1.884 r_mcangle_it 1.505 r_angle_refined_deg 1.322 r_rigid_bond_restr 1.287 r_mcbond_it 0.897 r_angle_other_deg 0.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.286 r_scangle_it 4.029 r_sphericity_free 3.148 r_scbond_it 2.506 r_sphericity_bonded 1.884 r_mcangle_it 1.505 r_angle_refined_deg 1.322 r_rigid_bond_restr 1.287 r_mcbond_it 0.897 r_angle_other_deg 0.841 r_symmetry_vdw_other 0.268 r_nbd_other 0.245 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.086 r_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2226 Nucleic Acid Atoms Solvent Atoms 497 Heterogen Atoms 11
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling SHELXD phasing SOLVE phasing REFMAC refinement HKL-2000 data reduction