☰ Navigation Tabs
CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF DNA GYRASE (BT3649) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.3 277 0.2M KFormate, 20.0% PEG-3350, No Buffer pH 7.3, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 7 277 20.0% PEG-6000, 0.1M HEPES pH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.541 α = 90 b = 154.968 β = 90 c = 106.12 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2004-07-06 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC 2004-09-18 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 1.020035,0.979718,0.979811 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.74 99 98.69 0.052 30.27 4.73 61062 32.84
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.74 1.77 86.87 0.428 3.61 3.37 2652
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 43.78 57756 3091 99.22 0.17951 0.17822 0.1868 0.20393 0.2071 RANDOM 34.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.8 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.044 r_dihedral_angle_4_deg 21.042 r_dihedral_angle_3_deg 11.442 r_scangle_it 7.32 r_dihedral_angle_1_deg 6.56 r_scbond_it 5.427 r_mcangle_it 3.22 r_mcbond_it 2.324 r_angle_refined_deg 1.644 r_angle_other_deg 0.832
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.044 r_dihedral_angle_4_deg 21.042 r_dihedral_angle_3_deg 11.442 r_scangle_it 7.32 r_dihedral_angle_1_deg 6.56 r_scbond_it 5.427 r_mcangle_it 3.22 r_mcbond_it 2.324 r_angle_refined_deg 1.644 r_angle_other_deg 0.832 r_mcbond_other 0.593 r_symmetry_vdw_other 0.255 r_nbd_refined 0.206 r_nbtor_refined 0.179 r_nbd_other 0.178 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.107 r_symmetry_vdw_refined 0.104 r_chiral_restr 0.102 r_nbtor_other 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3329 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 8
Software Software Software Name Purpose MOSFLM data reduction SCALEPACK data scaling SOLVE phasing REFMAC refinement