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CRYSTAL STRUCTURE OF an alpha/beta domain of a putative pyruvate kinase (AF0103) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.30 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 50.0% PEG-200, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.78 55.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.65 α = 90 b = 109.65 β = 90 c = 76.451 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-08-28 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 1.019859,0.979547,0.979667 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 24.9 100 0.085 21.9 14.4 66691 18.46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.3 1.33 100 0.974 2 10.1 4852
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 24.61 63320 3335 99.91 0.15499 0.15436 0.1626 0.16633 0.176 RANDOM 14.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.03 0.07 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_4_deg 19.272 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 5.952 r_scangle_it 4.812 r_scbond_it 3.532 r_mcangle_it 1.801 r_mcbond_it 1.713 r_angle_refined_deg 1.62 r_angle_other_deg 0.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_4_deg 19.272 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 5.952 r_scangle_it 4.812 r_scbond_it 3.532 r_mcangle_it 1.801 r_mcbond_it 1.713 r_angle_refined_deg 1.62 r_angle_other_deg 0.973 r_mcbond_other 0.295 r_symmetry_vdw_other 0.284 r_nbd_refined 0.217 r_nbd_other 0.198 r_symmetry_vdw_refined 0.174 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.099 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1441 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 38
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement CCP4 data scaling