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CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.5 277 8.0% Ethylene Glycol, 10.0% PEG 8000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.5 277 0.2M NaCl, 30.0% PEG 400, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.64 2.2 43.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.601 α = 90 b = 58.951 β = 90 c = 134.964 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2004-06-11 M MAD 2 1 x-ray 100 CCD ADSC 2004-08-27 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97957,0.979694,1.019859 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.46 29.48 97.9 0.059 16.5 5.6 78750 28.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.46 1.54 92 0.742 2.4 3.7 10604
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.46 29.48 74793 3955 97.69 0.14964 0.14832 0.1583 0.17483 0.1801 RANDOM 19.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.04 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.922 r_dihedral_angle_3_deg 12.275 r_dihedral_angle_4_deg 10.902 r_scangle_it 6.223 r_dihedral_angle_1_deg 5.902 r_scbond_it 3.95 r_mcangle_it 2.692 r_mcbond_it 1.608 r_angle_refined_deg 1.368 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.922 r_dihedral_angle_3_deg 12.275 r_dihedral_angle_4_deg 10.902 r_scangle_it 6.223 r_dihedral_angle_1_deg 5.902 r_scbond_it 3.95 r_mcangle_it 2.692 r_mcbond_it 1.608 r_angle_refined_deg 1.368 r_angle_other_deg 0.826 r_mcbond_other 0.435 r_symmetry_vdw_other 0.28 r_nbd_refined 0.217 r_nbd_other 0.191 r_nbtor_refined 0.176 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.133 r_metal_ion_refined 0.091 r_nbtor_other 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3225 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 36
Software Software Software Name Purpose XDS data scaling SCALA data scaling SHELX model building SHARP phasing REFMAC refinement XDS data reduction CCP4 data scaling SHELX phasing