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Crystal structure of Cell division protein ftsY (TM0570) from Thermotoga maritima at 1.60 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FTS PDB entry 1fts
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 277 10.0% PEG-6000, 0.1M Citrate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.446 α = 90 b = 48.102 β = 107.94 c = 90.792 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 24.88 98.8 0.097 18.2 8.6 84144 28.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 97.6 0.427 3.2 7.5 6096
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1fts 1.6 24.88 79919 4219 98.5 0.20905 0.20674 0.2203 0.2534 0.263 RANDOM 21.771
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.75 0.06 -0.44 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.222 r_dihedral_angle_3_deg 14.474 r_dihedral_angle_4_deg 14.058 r_scangle_it 7.219 r_dihedral_angle_1_deg 5.904 r_scbond_it 5.106 r_mcangle_it 3.202 r_mcbond_it 2.371 r_angle_refined_deg 1.66 r_angle_other_deg 0.845
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.222 r_dihedral_angle_3_deg 14.474 r_dihedral_angle_4_deg 14.058 r_scangle_it 7.219 r_dihedral_angle_1_deg 5.904 r_scbond_it 5.106 r_mcangle_it 3.202 r_mcbond_it 2.371 r_angle_refined_deg 1.66 r_angle_other_deg 0.845 r_mcbond_other 0.723 r_symmetry_vdw_other 0.237 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.183 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.1 r_nbtor_other 0.087 r_metal_ion_refined 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4408 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 14
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling