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X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 7 293 protein 10 mg/ml, 18% PEG2K, potassium nitrate 0.200 M,
MOPS 0.100 M, pH 7.0, Batch, temperature 293 K
Crystal Properties Matthews coefficient Solvent content 29.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.785 α = 90 b = 79.079 β = 90 c = 43.73 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm RH MIRROR 2004-04-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.97908,0.97931,0.97623 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99.4 0.068 14 4.5 37012
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 95.7 0.329 3.7 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 29.361 18785 1030 99.61 0.177 0.17675 0.1744 0.189 0.2206 0.2323 RANDOM 17.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.158 -0.165 -0.993
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.468 r_dihedral_angle_1_deg 5.378 r_scbond_it 5.327 r_scangle_other 3.776 r_mcangle_it 3.013 r_angle_refined_deg 2.001 r_mcbond_it 1.59 r_mcangle_other 1.349 r_scbond_other 1.287 r_angle_other_deg 1.019
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.468 r_dihedral_angle_1_deg 5.378 r_scbond_it 5.327 r_scangle_other 3.776 r_mcangle_it 3.013 r_angle_refined_deg 2.001 r_mcbond_it 1.59 r_mcangle_other 1.349 r_scbond_other 1.287 r_angle_other_deg 1.019 r_mcbond_other 0.347 r_symmetry_vdw_refined 0.345 r_symmetry_vdw_other 0.304 r_symmetry_hbond_refined 0.291 r_nbd_refined 0.264 r_nbd_other 0.247 r_xyhbond_nbd_refined 0.212 r_nbtor_refined 0.177 Metal-ion; symmetry: refined atoms 0.172 Metal-ion: refined atoms 0.132 r_chiral_restr 0.11 r_nbtor_other 0.087 r_bond_refined_d 0.023 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1554 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 18
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction