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Crystal structure of Spore coat polysaccharide biosynthesis protein spsE (BSU37870) from Bacillus subtilis at 2.38 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 18% PEG MME 2000, 0.04M Tris_base, 0.06M Tris Cl , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.74 66.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.578 α = 90 b = 70.578 β = 90 c = 205.359 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 ADSC Flat mirror 2004-05-20 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1 2 SYNCHROTRON SSRL BEAMLINE BL9-1 0.879288, 0.978780, 0.979359 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.38 29.29 99.9 0.076 13.5 6.9 24673 61.62
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.38 2.51 99.6 0.7 2.3 5.9 3515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.38 29.29 23362 1256 99.82 0.19271 0.19035 0.1893 0.23799 0.2381 RANDOM 62.978
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.57 -1.78 -3.57 5.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.701 r_dihedral_angle_3_deg 16.513 r_dihedral_angle_4_deg 15.146 r_scangle_it 8.737 r_dihedral_angle_1_deg 6.475 r_scbond_it 6.435 r_mcangle_it 3.719 r_mcbond_it 2.225 r_angle_refined_deg 1.508 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.701 r_dihedral_angle_3_deg 16.513 r_dihedral_angle_4_deg 15.146 r_scangle_it 8.737 r_dihedral_angle_1_deg 6.475 r_scbond_it 6.435 r_mcangle_it 3.719 r_mcbond_it 2.225 r_angle_refined_deg 1.508 r_nbtor_refined 0.308 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.129 r_symmetry_vdw_refined 0.119 r_chiral_restr 0.114 r_bond_refined_d 0.017 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2739 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 1
Software Software Software Name Purpose XDSauto data collection SCALA data scaling SHARP phasing autoSHARP phasing SOLOMON phasing REFMAC refinement XDS data reduction CCP4 data scaling