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Crystal structure of Hydroperoxide resistance protein OsmC (TM0919) from Thermotoga maritima at 1.80 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ML8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 0.2M CaCl2, 20% PEG-3350 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.03 38.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.754 α = 90 b = 39.789 β = 93.79 c = 110.448 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.32 98.1 0.082 10.2 2.6 51597 25.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 94.2 0.578 1.8 2.4 3615
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ml8 1.8 29.32 48955 2629 97.9 0.17292 0.17034 0.1794 0.2213 0.224 RANDOM 8.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.01 -0.43 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.775 r_dihedral_angle_4_deg 19.8 r_dihedral_angle_3_deg 13.66 r_scangle_it 6.839 r_dihedral_angle_1_deg 6.089 r_scbond_it 5.021 r_mcangle_it 2.635 r_mcbond_it 2.191 r_angle_refined_deg 1.517 r_angle_other_deg 1.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.775 r_dihedral_angle_4_deg 19.8 r_dihedral_angle_3_deg 13.66 r_scangle_it 6.839 r_dihedral_angle_1_deg 6.089 r_scbond_it 5.021 r_mcangle_it 2.635 r_mcbond_it 2.191 r_angle_refined_deg 1.517 r_angle_other_deg 1.004 r_mcbond_other 0.725 r_symmetry_vdw_other 0.235 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.189 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.092 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4476 Nucleic Acid Atoms Solvent Atoms 464 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling