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CRYSTAL STRUCTURE OF A DTDP-4-DEHYDRORHAMNOSE REDUCTASE, RFBD ORTHOLOG (CA_C2315) FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824 AT 2.05 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 0.06M MES, 0.04M MES_Na, 2% NP_PEG MME 2000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 277 0.06M MES, 0.04M MES_Na, 2% NP_PEG MME 2000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.64 53.4 2.62 52.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.8 α = 90 b = 130.67 β = 90 c = 151.05 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-03-10 M SINGLE WAVELENGTH 2 1 x-ray 100 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9795,0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.05 19.99 99.9 0.076 12.5 4.9 66292 40.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.05 2.16 100 0.572 2.3 4.8 9628
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 19.99 63619 2667 99.86 0.17072 0.16921 0.1813 0.20701 0.2215 RANDOM 38.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.66 -0.29 -2.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.445 r_dihedral_angle_4_deg 21.169 r_dihedral_angle_3_deg 14.012 r_scangle_it 6.85 r_dihedral_angle_1_deg 5.811 r_scbond_it 5.138 r_mcangle_it 2.779 r_mcbond_it 2.181 r_angle_refined_deg 1.529 r_angle_other_deg 0.953
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.445 r_dihedral_angle_4_deg 21.169 r_dihedral_angle_3_deg 14.012 r_scangle_it 6.85 r_dihedral_angle_1_deg 5.811 r_scbond_it 5.138 r_mcangle_it 2.779 r_mcbond_it 2.181 r_angle_refined_deg 1.529 r_angle_other_deg 0.953 r_symmetry_vdw_refined 0.322 r_mcbond_other 0.32 r_symmetry_vdw_other 0.279 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.191 r_nbd_other 0.187 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_other 0.11 r_chiral_restr 0.09 r_nbtor_other 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6583 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 149
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing