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Crystal structure of a putative nitroreductase (tm1586) from thermotoga maritima msb8 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4.6 277 Acetate pH 4.6, 0.2M (NH4)2SO4, 20% Glycerol, 25% PEG-4000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 43.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.299 α = 90 b = 45.299 β = 90 c = 192.752 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-04-04 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979029, 0.918370,0.978835 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 39.23 97.1 0.059 18 5.7 15922 41.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.05 82.3 0.229 3.2 3.2 969
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 39.23 15544 827 99.79 0.2118 0.21022 0.24281 0.3068 RANDOM 32.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.15 0.29 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.558 r_dihedral_angle_3_deg 14.704 r_dihedral_angle_4_deg 9.222 r_dihedral_angle_1_deg 5.944 r_scangle_it 4.967 r_scbond_it 3.796 r_mcangle_it 2.219 r_mcbond_it 1.529 r_angle_refined_deg 1.13 r_angle_other_deg 0.739
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.558 r_dihedral_angle_3_deg 14.704 r_dihedral_angle_4_deg 9.222 r_dihedral_angle_1_deg 5.944 r_scangle_it 4.967 r_scbond_it 3.796 r_mcangle_it 2.219 r_mcbond_it 1.529 r_angle_refined_deg 1.13 r_angle_other_deg 0.739 r_mcbond_other 0.297 r_symmetry_vdw_refined 0.204 r_symmetry_vdw_other 0.196 r_nbd_refined 0.192 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.139 r_nbtor_other 0.08 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1751 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 10
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing SHARP phasing REFMAC refinement CCP4 data scaling