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Crystal structure of an indigoidine synthase a (idga)-like protein (tm1464) from thermotoga maritima msb8 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.4 277 7% PEG 1000, 0.045M HEPES_Na, 0.055M HEPES, 0.01M MANGANESE (II) CHLORIDE, pH 7.4, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.36 2 37.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.958 α = 90 b = 130.799 β = 90 c = 138.75 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-10-12 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC 2003-10-12 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0000, 0.9797, 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 75.23 99.1 0.063 13.7 4.7 130700 32.57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.95 93.3 0.533 1.9 2.8 9022
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 75.23 124050 6577 98.93 0.15618 0.15384 0.1651 0.19959 0.2076 RANDOM 24.631
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.64 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 21.165 r_dihedral_angle_3_deg 13.69 r_scangle_it 7.294 r_dihedral_angle_1_deg 5.839 r_scbond_it 5.308 r_mcangle_it 2.688 r_mcbond_it 2.058 r_angle_refined_deg 1.514 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 21.165 r_dihedral_angle_3_deg 13.69 r_scangle_it 7.294 r_dihedral_angle_1_deg 5.839 r_scbond_it 5.308 r_mcangle_it 2.688 r_mcbond_it 2.058 r_angle_refined_deg 1.514 r_angle_other_deg 0.846 r_mcbond_other 0.668 r_symmetry_vdw_other 0.259 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.189 r_nbd_other 0.175 r_symmetry_vdw_refined 0.168 r_chiral_restr 0.089 r_nbtor_other 0.083 r_xyhbond_nbd_refined 0.053 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13623 Nucleic Acid Atoms Solvent Atoms 984 Heterogen Atoms 138
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing SHARP phasing REFMAC refinement CCP4 data scaling