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Crystal structure of Glia maturation factor-gamma (GMFG) from Mus musculus at 1.50 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F7S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.5 277 30% PEG-4000, 0.1M Tris hydrochloride pH 8.5,0.2M lithium sulfate monohydrate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.81 31.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.049 α = 69.95 b = 34.605 β = 87.51 c = 38.365 γ = 70.46
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 35.92 76.6 0.044 16.4 2.6 22189 22.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.39 23.8 0.38 2.2 1.9 518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1f7s 1.35 35.92 21048 1141 76.55 0.15996 0.1581 0.1673 0.19411 0.2008 RANDOM 14.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.34 -0.31 -0.24 -0.02 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.283 r_dihedral_angle_4_deg 14.945 r_dihedral_angle_3_deg 12.456 r_scangle_it 6.302 r_dihedral_angle_1_deg 5.978 r_scbond_it 4.18 r_mcangle_it 2.812 r_mcbond_it 1.995 r_angle_refined_deg 1.564 r_angle_other_deg 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.283 r_dihedral_angle_4_deg 14.945 r_dihedral_angle_3_deg 12.456 r_scangle_it 6.302 r_dihedral_angle_1_deg 5.978 r_scbond_it 4.18 r_mcangle_it 2.812 r_mcbond_it 1.995 r_angle_refined_deg 1.564 r_angle_other_deg 0.836 r_mcbond_other 0.499 r_symmetry_vdw_other 0.305 r_nbd_refined 0.23 r_nbd_other 0.192 r_xyhbond_nbd_refined 0.17 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.095 r_nbtor_other 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1133 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling