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CRYSTAL STRUCTURE OF A PUTATIVE SERINE HYDROLASE (YDR428C) FROM SACCHAROMYCES CEREVISIAE AT 1.85 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 298 16.00% PEG MME 2000, 0.10M HEPES, 0.00M HEPES_Na, 5% Glycerol , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.93 35.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.967 α = 90 b = 85.959 β = 97.71 c = 70.479 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-11-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 8-BM 0.9464, 0.979326, 0.979179 APS 8-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.77 0.069 17.88 3.89 42225 27.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 98.39 0.343 3.57 3.57 4159
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 37.44 39479 2060 100 0.14523 0.14292 0.1536 0.1894 0.152 RANDOM 26.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.02 0.07 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.422 r_dihedral_angle_4_deg 16.53 r_dihedral_angle_3_deg 13.328 r_dihedral_angle_1_deg 5.771 r_scangle_it 4.247 r_scbond_it 3.072 r_angle_refined_deg 1.698 r_mcangle_it 1.659 r_mcbond_it 1.496 r_angle_other_deg 0.909
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.422 r_dihedral_angle_4_deg 16.53 r_dihedral_angle_3_deg 13.328 r_dihedral_angle_1_deg 5.771 r_scangle_it 4.247 r_scbond_it 3.072 r_angle_refined_deg 1.698 r_mcangle_it 1.659 r_mcbond_it 1.496 r_angle_other_deg 0.909 r_mcbond_other 0.373 r_symmetry_vdw_other 0.266 r_symmetry_vdw_refined 0.245 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.215 r_nbd_other 0.181 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.11 r_nbtor_other 0.088 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4133 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing