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CRYSTAL STRUCTURE OF A PUTATIVE THIAMINE BIOSYNTHESIS/SALVAGE PROTEIN (TM0486) FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 9.6 277 20% PEG-8000, 0.1M CHES pH 9.5, pH 9.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K. cryo condition: 12% PEG 200.
Crystal Properties Matthews coefficient Solvent content 1.97 36.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.646 α = 73.8 b = 47.65 β = 62.9 c = 49.608 γ = 73.62
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-12-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0332, 0.9796 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 41.71 76.1 0.06 10.2 1.9 25897 24.97
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 23.9 0.116 3.7 1.6 607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 41.71 24544 1336 76.08 0.14404 0.14151 0.155 0.18956 0.2009 RANDOM 14.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.52 0.44 0.49 -0.03 -1.19
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.941 r_dihedral_angle_1_deg 5.811 r_scbond_it 5.719 r_mcangle_it 3.301 r_mcbond_it 1.737 r_angle_refined_deg 1.443 r_angle_other_deg 1.047 r_nbd_refined 0.397 r_nbd_other 0.249 r_symmetry_vdw_other 0.22
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.941 r_dihedral_angle_1_deg 5.811 r_scbond_it 5.719 r_mcangle_it 3.301 r_mcbond_it 1.737 r_angle_refined_deg 1.443 r_angle_other_deg 1.047 r_nbd_refined 0.397 r_nbd_other 0.249 r_symmetry_vdw_other 0.22 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.136 r_nbtor_other 0.087 r_chiral_restr 0.079 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3014 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 48
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE model building REFMAC refinement CCP4 data scaling RESOLVE phasing