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Crystal structure of PfkB Carbohydrate kinase (TM0415) from Thermotoga maritima at 1.91 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7 277 TRIS pH 7, 15% Ethanol , pH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.08 40.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.29 α = 90 b = 68.53 β = 90 c = 96.02 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-04-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.939244, 0.979414, 0.979121 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 19.77 89.4 0.066 27.3 12.6 20420 27.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2.02 58 0.209 9.4 8.1 1885
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.91 19.77 19333 1038 89.4 0.17007 0.1676 0.1812 0.21938 0.2327 RANDOM 20.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.72 0.45
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.508 r_dihedral_angle_1_deg 6.17 r_scbond_it 5.713 r_mcangle_it 3.663 r_mcbond_it 2.074 r_angle_refined_deg 1.542 r_angle_other_deg 0.873 r_symmetry_vdw_other 0.31 r_nbd_other 0.244 r_nbd_refined 0.208
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.508 r_dihedral_angle_1_deg 6.17 r_scbond_it 5.713 r_mcangle_it 3.663 r_mcbond_it 2.074 r_angle_refined_deg 1.542 r_angle_other_deg 0.873 r_symmetry_vdw_other 0.31 r_nbd_other 0.244 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.101 r_chiral_restr 0.097 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2212 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling XDS data scaling SHELX model building autoSHARP phasing REFMAC refinement CCP4 data scaling SHELX phasing