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Crystal structure of succinyl diaminopimelate desuccinylase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.67 54.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.655 α = 90 b = 56.5 β = 103.19 c = 101.4 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.9795 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 39.84 97.6 0.098 10.6 8.6 81454 81454
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 84 0.02167 0.9 5.4
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION Se-Met SAD phasing 1.9 39.84 71896 3597 0.213 0.2 0.266 0.2447 33.477
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.059 -0.23 0.499 -0.662
RMS Deviations Key Refinement Restraint Deviation p_scangle_it 4.268 p_scbond_it 3.047 p_mcangle_it 2.696 p_planar_tor 2.519 p_angle_d 2.364 p_mcbond_it 1.711 p_chiral_restr 0.152 p_bond_d 0.014 p_plane_restr 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5706 Nucleic Acid Atoms Solvent Atoms 752 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction REFMAC refinement CCP4 data scaling TRUNCATE data scaling