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Formyl-CoA transferase mutant Asp169 to Glu
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5R PDB entry 1P5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 4000, Hepes, Mg chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.79 55.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.042 α = 90 b = 150.042 β = 90 c = 99.645 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2003-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.812 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 100 0.114 12.7 5.2 61094 61094 32.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.64 2.1 4.7 9394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 1P5R 2.1 19.8 61094 61094 3275 99.99 0.18409 0.18409 0.18225 0.188 0.22006 0.2242 RANDOM 38.997
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.268 r_scangle_it 2.925 r_scbond_it 1.823 r_mcangle_it 1.386 r_angle_refined_deg 1.376 r_angle_other_deg 0.83 r_mcbond_it 0.751 r_symmetry_vdw_other 0.247 r_nbd_other 0.234 r_xyhbond_nbd_refined 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.268 r_scangle_it 2.925 r_scbond_it 1.823 r_mcangle_it 1.386 r_angle_refined_deg 1.376 r_angle_other_deg 0.83 r_mcbond_it 0.751 r_symmetry_vdw_other 0.247 r_nbd_other 0.234 r_xyhbond_nbd_refined 0.221 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.128 r_chiral_restr 0.086 r_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6628 Nucleic Acid Atoms Solvent Atoms 453 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling